setup: defer object database creation

In a subsequent commit we'll make the creation of the on-disk data
structures of an object database pluggable. This will lead to an
in-between state where we have already configured the repository's
object database, but it's not usable yet until we eventually call
`create_object_directory()`.

Lift the call to `odb_new()` out of `apply_repository_format()` so that
callers have more wiggle room with when exactly they call it, and adapt
them accordingly. The only exception is `init_db()`, where we now defer
creating the object database until we call `create_object_database()`.

With this change, initializing and creating the object database on disk
is now neatly encapsulated in a single function, which will make it
easier for a subsequent commit to move creation of the on-disk data
structures into the `struct odb_source` backends.

Signed-off-by: Patrick Steinhardt <ps@pks.im>
Signed-off-by: Junio C Hamano <gitster@pobox.com>

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