repository: move fetch_if_missing into struct repository

The global variable 'fetch_if_missing' controls whether a missing
object check should prompt a lazy fetch from a promisor remote.
In order to continue the libification effort, move it into
'struct repository' and initialize it to 1 by default to keep the
previous behavior.

builtin/fetch-pack.c, builtin/fsck.c, and builtin/rev-list.c are
entered via commands marked RUN_SETUP in git.c:commands[]. Their
'repo' parameter is only NULL when '-h' is given outside of a
repository, in which case either show_usage_if_asked() or
parse_options()'s own '-h' handling exits the process before
returning. We can therefore drop their UNUSED markers and assign
to 'repo' directly.

builtin/index-pack.c is entered via RUN_SETUP_GENTLY, so its
'repo' pointer can be NULL any time it is run outside of a
repository, not only with '-h'. We keep a NULL check there and fall
back to 'the_repository'.

builtin/pack-objects.c needs two adjustments to make 'repo' reach
every 'fetch_if_missing' call site: 'read_stdin_packs()' now takes a
'struct repository *'; 'option_parse_missing_action()', which
is registered as an OPT_CALLBACK, receives a 'repo' through the
option's 'value' field now.

Additionally, update the partial clone documentation to reflect
that this is now a per-repository flag.

Mentored-by: Christian Couder <christian.couder@gmail.com>
Mentored-by: Ayush Chandekar <ayu.chandekar@gmail.com>
Mentored-by: Olamide Caleb Bello <belkid98@gmail.com>
Signed-off-by: Tian Yuchen <cat@malon.dev>
Signed-off-by: Junio C Hamano <gitster@pobox.com>

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